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Cheap Flights from Tokyo (TYOA) to El Nido (ENI)

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Flight deals from Tokyo to El Nido Airport

Looking for a cheap last-minute deal or the best return flight from Tokyo to El Nido Airport? If you want to travel next month, return fares start from £415. Find the lowest prices on one-way and return tickets right here.
Is this a good flight price? We’ll tell you.We compare today’s Tokyo to El Nido Airport prices with what travellers usually pay, so you can see if now’s a good time to book, or if it’s worth waiting.
El Nido.£196 per passenger.Departing Mon, 24 Aug, returning Sat, 29 Aug.Return flight with Cebu Pacific and Air Swift.Outbound indirect flight with Cebu Pacific, departs from Tokyo Narita on Mon, 24 Aug, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Sat, 29 Aug, arriving in Tokyo Narita.Price includes taxes and charges.From £196, select.
El Nido.£245 per passenger.Departing Fri, 23 Oct, returning Sun, 25 Oct.Return flight with Cebu Pacific and Cebgo.Outbound indirect flight with Cebu Pacific, departs from Tokyo Narita on Fri, 23 Oct, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Sun, 25 Oct, arriving in Tokyo Narita.Price includes taxes and charges.From £245, select.
El Nido.£258 per passenger.Departing Mon, 8 Jun, returning Sat, 13 Jun.Return flight with Cebu Pacific and Cebgo.Outbound indirect flight with Cebu Pacific, departs from Tokyo Narita on Mon, 8 Jun, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Sat, 13 Jun, arriving in Tokyo Narita.Price includes taxes and charges.From £258, select.
El Nido.£373 per passenger.Departing Fri, 8 Jan, returning Fri, 15 Jan.Return flight with Philippine Airlines and Cebgo.Outbound indirect flight with Philippine Airlines, departs from Tokyo Haneda on Fri, 8 Jan, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Fri, 15 Jan, arriving in Tokyo Narita.Price includes taxes and charges.From £373, select.
El Nido.£409 per passenger.Departing Mon, 4 May, returning Wed, 13 May.Return flight with Cebu Pacific and Cebgo.Outbound indirect flight with Cebu Pacific, departs from Tokyo Narita on Mon, 4 May, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Wed, 13 May, arriving in Tokyo Narita.Price includes taxes and charges.From £409, select.
El Nido.£415 per passenger.Departing Sat, 18 Apr, returning Thu, 23 Apr.Return flight with HK Express and Cebgo.Outbound indirect flight with HK Express, departs from Tokyo Narita on Sat, 18 Apr, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Thu, 23 Apr, arriving in Tokyo Narita.Price includes taxes and charges.From £415, select.
El Nido.£441 per passenger.Departing Mon, 27 Apr, returning Sat, 9 May.Return flight with Cebu Pacific and Cebgo.Outbound indirect flight with Cebu Pacific, departs from Tokyo Narita on Mon, 27 Apr, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Sat, 9 May, arriving in Tokyo Narita.Price includes taxes and charges.From £441, select.
El Nido.£513 per passenger.Departing Sun, 29 Mar, returning Mon, 6 Apr.Return flight with Eastar Jet and Air Swift.Outbound indirect flight with Eastar Jet, departs from Tokyo Narita on Sun, 29 Mar, arriving in El Nido.Inbound indirect flight with Air Swift, departs from El Nido on Mon, 6 Apr, arriving in Tokyo Narita.Price includes taxes and charges.From £513, select.
El Nido.£786 per passenger.Departing Thu, 19 Mar, returning Mon, 23 Mar.Return flight with Cebu Pacific and Cebgo.Outbound indirect flight with Cebu Pacific, departs from Tokyo Narita on Thu, 19 Mar, arriving in El Nido.Inbound indirect flight with Cebgo, departs from El Nido on Mon, 23 Mar, arriving in Tokyo Narita.Price includes taxes and charges.From £786, select.

Find the cheapest month to fly from Tokyo to El Nido

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to El Nido flights are currently cheapest in August.
Mar
from £786
Apr
from £415
May
from £409
Jun
from £258
Jul
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Aug
from £196
Sep
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Oct
from £245
Nov
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Dec
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Jan
from £373
Feb
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Tokyo to El Nido: Alternative routes

Compare routes from Tokyo to El Nido below. You may find an airport to fly into that's cheaper, faster, or easier than El Nido.

El Nido

3 miles from central El Nido
ClosestCheapest
from £196
Search flights

San Vicente

49 miles from central El Nido
Search flights

Tokyo to El Nido: Flight information

The things to know before you go.
Cheapest flight found£196
Cheapest month to flyAugust

Check out these El Nido hotels

Ready to plan your stay? Other travellers rate these El Nido hotels for cleanliness, service and location.
The Funny Lion - El Nido
5.03 miles from city centre
£119
Per night
Mama Hostel Bed & Breakfast
4.73 miles from city centre
£14
Per night
Focus Rooms
5.34 miles from city centre
£108
Per night
The Funny Lion - El Nido
5.03 miles from city centre
£119
Per night
Mama Hostel Bed & Breakfast
4.73 miles from city centre
£14
Per night
Focus Rooms
5.34 miles from city centre
£108
Per night
Explore top-rated hotels

Finding cheap flights from Tokyo to El Nido: Frequently asked questions

The best price we found for a return flight from Tokyo to El Nido is £196. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
Currently, there are no airlines that fly direct from Tokyo to El Nido. But we found flights with one stop from £196.
As of March 2026, there are no flights flying from Tokyo to El Nido.
The cheapest month to fly from Tokyo to El Nido is usually August.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to El Nido Airport on Monday, 24 August 2026.
No airlines currently offer direct flights between Tokyo and El Nido Airport. Most routes have one or more stops.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to El Nido but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to El Nido is around 40 days in advance, so don’t leave your flight to the last minute.
The cheapest airline that flies to El Nido is Cebu Pacific .

Flying from Tokyo to El Nido Airport (ENI): What you need to know

  • The timezone in El Nido is UTC+8, which is one hour behind Tokyo. El Nido Airport is located in El Nido.

  • Your flight from Tokyo to ENI won't wait if you're late, so don't forget to check in on time. Arrive up to one hour in advance for domestic flights and two hours ahead for international travel.

  • Be prepared for longer queues in popular months such as March and other peak seasons. Arriving up to four hours ahead of an international flight and two hours for a domestic departure is a wise move.

Airports in Tokyo

Tokyo Haneda International Airport (HND)

  • Located around 19 kms (12 miles) from the centre of Tokyo, HND can be reached in about 25 minutes by car (depending on traffic). The journey on public transport is roughly 30 minutes.

  • Looking for a convenient hotel close to Tokyo Haneda International Airport? If you've booked an early flight from Tokyo to El Nido Airport, these stays will put you just around the corner from the terminal:

  • When it comes to the on-time performance of Tokyo Haneda International Airport, 73% of flights arrive within the scheduled time frame.

  • HND is located at 3丁目 Hanedakuko, Ota.

Tokyo Narita International Airport (NRT)

  • You can get to NRT from central Tokyo in about 1 hour 5 minutes by car (depending on traffic conditions). The ride on public transport takes roughly 1 hour to cover the 56 kms (35 miles) or so.

  • Kick off your holiday early with an additional night away from home. Before your Tokyo to ENI flight, unwind in one of these hotels near Tokyo Narita International Airport:

  • Tokyo Narita International Airport has an on-time performance rate of 70%. This figure reflects how often flights that take off from this airport land at their destination on time.

  • The street address for NRT is 成田空港第2PTB(バス), Narita.

About El Nido Airport (ENI)

  • The last thing you need is a lengthy journey to your hotel if you're getting in late on a flight from Tokyo to El Nido Airport. Check in to one of these accommodation options near ENI instead:

  • Pick up a El Nido Airport rental car and discover El Nido and beyond with your own wheels. Hertz, Dollar and Thrifty are top outlets to choose from here.

  • Booking your vehicle around four weeks ahead of your Tokyo to El Nido Airport flight can help you get the lowest rate.

Getting from El Nido Airport (ENI) to central El Nido

  • El Nido Airport is roughly 0.97 kms (0.60 miles) from central El Nido. How long it'll take to get to the centre by taxi or car hire depends on the time of day. Do a little research beforehand.

  • Travelling by public transport takes about 20 minutes.

How to find the cheapest flights from Tokyo to El Nido Airport (ENI)

  • The lowest price we've found for a one-way ticket from Tokyo to El Nido Airport is £97. For a return flight on this route, the best price is £196. Depending on the availability when you book, these fares could change.

  • Booking in advance is often the key to scoring a cheap flight from Tokyo to ENI. Airlines adjust prices based on demand, so the closer your departure date, the more you'll likely pay.

  • If you have some flexibility with your travel plans, use the 'Whole month' search tool. It'll show you the cheapest price across each month when searching for your Tokyo to El Nido Airport ticket.

  • Snapping up a cheap plane ticket from Tokyo to ENI is a breeze with Price Alerts. All you need to do is set up one of these automatic alerts and we'll get in touch as soon as a lower fare pops up.

  • Find an affordable flight from Tokyo to El Nido Airport by using filters. Select your ideal departure time, duration and airlines, then sort the results by 'Cheapest' for the best deals.

The best time to fly from Tokyo to El Nido Airport (ENI)

  • It's time to work out when to book your flight from Tokyo to El Nido Airport (ENI). January is when most people travel to El Nido. If you like your getaways a little more chill, go in October.

  • Lock in a Tokyo to ENI plane ticket departing in May if you're eager to explore the city during its warmest month. Expect temperatures in El Nido to range from 26ºC to 30ºC.

  • If you like travelling in cooler conditions, look for a cheap ticket from Tokyo to El Nido Airport in February when temperatures are between 25ºC and 29ºC.

More about El Nido

  • Start your El Nido trip right by choosing the ideal place to stay. After booking your flight from Tokyo to El Nido Airport, explore our range of hotels including:

  • El Nido Paradise and El Nido boat tours embark are just the start of the major attractions to put on your El Nido itinerary. Keep the sightseeing going at El Nido Beach.

Explore more of the Philippines

  • You've seen El Nido, now it's time to discover other corners of the Philippines. Journey around 177 kms (110 miles) southwest to Puerto Princesa to check off its leading sights. From Dos Palmas to Firefly Watching and Tubbataha Management Office, you've got a jam-packed schedule ahead.

  • San Jose is another standout destination in the Philippines and is around 225 kms (140 miles) northeast of El Nido. No journey is complete without experiencing Crystal Blue Water, Aroma Beach and Bubog Beach.

Plan the rest of your trip from Tokyo to El Nido

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.